I love the pegs on my Road Glide. My only complaint is their uneven, you can’t tell when you are riding or looking at it. Only when you look down from above. Any clue why Harley would do this?

 

Maybe because the frame is designed to accept the engine and its mounting limitations.

 

Just a guess. It looks like you have an extended brake pedal. The peg mounts were likely designed to work in conjunction with the OE brake pedal. Without that offset you may be fumbling around trying to get your toe on top of the OE brake lever.