How much "not flat footed"? Both feet at the same time or are your toes barely making it to the tar?

Are you wearing boots or sandals?

Keep in mind they changed the frame in 2004. No 2004 or newer seats will fit your bike without a bit of adjustment. There are not many front fork kits that will give you less than a hugger has without giving you only 1" of travel. Rear shocks form just about anywhere will help both the ride and the height. HD no longer makes the low Fox shocks for pre 2004 models, you will have to go outside of the HD brand.